PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033664
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 193aa    MW: 21134.6 Da    PI: 9.9072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033664genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.45e-201969256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+taeeAa a++ a+++++g+
  Lus10033664 19 RYRGVRKRP-WGRYAAEIRDPRK---KTRVWLGTFDTAEEAAIAYDTAAREFRGN 69
                 69*******.**********843...6*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.31E-291876No hitNo description
SuperFamilySSF541719.81E-231976IPR016177DNA-binding domain
PfamPF008473.3E-131968IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-321976IPR001471AP2/ERF domain
PROSITE profilePS5103224.0781976IPR001471AP2/ERF domain
SMARTSM003801.6E-381982IPR001471AP2/ERF domain
PRINTSPR003672.7E-112031IPR001471AP2/ERF domain
PRINTSPR003672.7E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSPPSKQKKK ASPSAAEQRY RGVRKRPWGR YAAEIRDPRK KTRVWLGTFD TAEEAAIAYD  60
TAAREFRGNK AKTNFPSPDE MSRGSSSSRS GTAEEDQEES FTPPPPPETA AGVLKSGIAA  120
RFPFQNPVWP FDGVSRPDFT YPEQRIIPTK SAFEFGLGSE RNSSAVVEGC KPAGRKDLDL  180
DLELRLAPPS TA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-221484980Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033664
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305665.13e-40ethylene-responsive transcription factor 8
SwissprotQ9LW493e-34ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLR0IN887e-39R0IN88_9BRAS; Uncharacterized protein
STRINGLus100336641e-136(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-23erf domain protein 9