PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033775
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 947aa    MW: 104815 Da    PI: 8.531
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033775genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT++E+  l+ +v ++G g W+tI +          R+  ++k++w++
      Lus10033775  5 KQKWTADEEAALKAGVIKHGAGKWRTILKDPEysgvlYLRSNVDLKDKWRN 55
                     79****************************99999**88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.432161IPR017930Myb domain
SuperFamilySSF466896.68E-15273IPR009057Homeodomain-like
SMARTSM007172.5E-6459IPR001005SANT/Myb domain
PfamPF002497.0E-7555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-11556IPR009057Homeodomain-like
CDDcd116601.78E-16656No hitNo description
PROSITE profilePS513755.108146180IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.369183213IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.605216251IPR002885Pentatricopeptide repeat
PfamPF015350.78220249IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.278252286IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.087287321IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0018290314IPR002885Pentatricopeptide repeat
PfamPF015350.002290316IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.805349384IPR002885Pentatricopeptide repeat
PfamPF015350.013353377IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.684419449IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-4422511IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.306450480IPR002885Pentatricopeptide repeat
PfamPF130413.3E-8450496IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-4452479IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.892484519IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.281520554IPR002885Pentatricopeptide repeat
PfamPF015350.38524547IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-4580606IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.24586620IPR002885Pentatricopeptide repeat
PfamPF144325.5E-12623712IPR032867DYW domain
SMARTSM005261.7E-10748825IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.203757830IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.62E-14765839IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-13766830IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.4E-7768823IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MGAPKQKWTA DEEAALKAGV IKHGAGKWRT ILKDPEYSGV LYLRSNVDLK DKWRNMSVMA  60
HGWTSREKSK LVTKRVHNVI KQEESPVTTG NNVKSDEDAV DIRPPEAAVP LMQIPAPIRS  120
AIRSALHRGS MFGRSPLMKC VSRLFLPSHL RSLLRSCARQ SSLSAGKQLH AVIFTSGLQV  180
SSNSFLMNAL LHLYSSCGVL NYARCLFNQI PHSYKDTADW TSLLNCLSQN EKNPFESYSL  240
FCEMRRKNVI VDDVVLLCML GLCARVGDFK MGTQLHGCMM KMGFRDSVKT CNAMMNMHVK  300
CGLIVDARRI FFEMNEPNVV SWSILLEGVI KWEGVQKGME LFDAMPEKNE VGWTIMIAGC  360
VESGFIKQGC KLLNEMVFSS GFRLNYVSLC SILSASAQSG DVAIGRWVHV FALKEGDLNL  420
MVGTALVNMY AKCGRIKMAI KVFDNLPRRN VVTWNAMLGG LAMHGKGNTV LEMFNKMLKE  480
VPPDDLTFIA VLSACSHAGL VDQGRKYFLN LQSEYGIIPK IDHYACMVDL LGRAGHLEEA  540
EILIGDMPMP PNEVVLGSLL GSCNIHGKLK LGEKILQDLA EMDPHNTEYH ILLSNIYALS  600
GKLEQANSLR DGLASRRIRK IPGLSSIHVG GHVHQFTAGD KSHPRTSEIY HTLDDMVIRL  660
RLAGYVPHTA SQVFSGGDGS NNIEEKEQAL LFHSEKLAFC FGLISTRPET ATDSTASGTV  720
HVLALIIGDL GWKSLYRKVP CNMPTESHSS SSKYSEDGVE WNQIWLDNLI MEAITTLMEP  780
DGSNKTAIAS YIEEQYWPPQ DFKRLLSEKL KHLTSCGKLI KVKRKYRIAA TPFANRKRSA  840
YMLLQDGRPK AFERAEREDL KMPTKAQVDV EVSKMRRLSA QAAEAAAARA VTEADAAIAE  900
ADEAARDAEA AEADAEAAVA YAEAVMKTSK GRNNAKTMRV NTQGKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-4915261815328PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033775
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084745.10.0pentatricopeptide repeat-containing protein At5g15340, mitochondrial
SwissprotQ9LXE80.0PP386_ARATH; Pentatricopeptide repeat-containing protein At5g15340, mitochondrial
TrEMBLA0A067JT920.0A0A067JT92_JATCU; Uncharacterized protein
STRINGLus100337750.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-45telomere repeat binding factor 1
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]