PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033798
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 249aa    MW: 26845.5 Da    PI: 8.7652
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033798genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-0583105123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+ksFs+   L  H  +H
  Lus10033798  83 YSCKVCDKSFSTFQALGGHKASH 105
                  99**********99999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-783105No hitNo description
PROSITE profilePS5015710.01483110IPR007087Zinc finger, C2H2
PfamPF139127.8E-1283107IPR007087Zinc finger, C2H2
SMARTSM003550.02183105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-7134161No hitNo description
PfamPF139128.0E-10138163IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39139161IPR007087Zinc finger, C2H2
SMARTSM003557.5139161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MALEALNSPT TASTSKFNHQ QDDSWSKRKR SNRPRSSDDE YLAFCLLMLA RGKNNNPDSN  60
SNFNFKPLPT PPPLQTSSNQ LSYSCKVCDK SFSTFQALGG HKASHRKSSN SAADQNPTHP  120
PPASSAEIPS TSNNAARTHE CSICHKTFSC GQALGGHKRC HYEGTINHHK NSTTTTLTTT  180
TTQSQSRSQS RCDGLGFEFD LNLPASPELG SGEGSGAAKK SSREEEVESA LPVKKPRLSL  240
TLPVPHSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033798
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458091.17e-65zinc finger protein ZAT10
TrEMBLA0A2K2C5R12e-63A0A2K2C5R1_POPTR; Uncharacterized protein
STRINGLus100337980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-26salt tolerance zinc finger