PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033885
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 259aa    MW: 28338.4 Da    PI: 6.1463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033885genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-18111161255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+++AeIrd +    +  r++lg+f+t+eeAa a+++a+++l g
  Lus10033885 111 AYRGVRTRP-WGKYAAEIRDSTR---HgVRVWLGTFDTPEEAALAYDQAALSLQG 161
                  69****999.**********422...25***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.45E-28110170No hitNo description
SuperFamilySSF541712.48E-22110170IPR016177DNA-binding domain
PROSITE profilePS5103222.721111169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-30111170IPR001471AP2/ERF domain
SMARTSM003801.5E-34111175IPR001471AP2/ERF domain
PfamPF008474.5E-13111161IPR001471AP2/ERF domain
PRINTSPR003672.3E-10112123IPR001471AP2/ERF domain
PRINTSPR003672.3E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLDPYYNYYS SSPSPLDYLS SPPPPPHTHS PPPPPPQTHY WGPDGGELQQ EEEEASNFLL  60
YPPSNSTSSS DPCSQAPPPP PLEEATSSSG KKKKKQTKNN NSTATTVYKS AYRGVRTRPW  120
GKYAAEIRDS TRHGVRVWLG TFDTPEEAAL AYDQAALSLQ GSRAVLNFPA EEVSRSLEEI  180
GCGLGECSSP AQALKQTNYV KRKALSRKRK GKRGVIDQGD LGIANSNPII KKEEVVEFED  240
LGTAFLEQLL FESSTTNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-271121711574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995GKKKKKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033885
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744471e-78JX174447.1 Linum usitatissimum clone LuBAC375N24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251362.13e-47PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y97e-45ERFC3_SOLLC; Ethylene-response factor C3
STRINGLus100338850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-42ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]