PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033889
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 298aa    MW: 32558.2 Da    PI: 4.6072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033889genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l ++++++G g+W++ ++  g+ R++k+c++rw +yl
      Lus10033889 14 KGPWTSEEDHILTNYIQLYGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.23.5e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ +++++++lG++ W+tIa++++ gRt++++k+ w+++l
      Lus10033889  67 RGNFTPDEEDTIIELHNMLGNR-WSTIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.254961IPR017930Myb domain
SuperFamilySSF466896.24E-3110108IPR009057Homeodomain-like
SMARTSM007173.1E-121363IPR001005SANT/Myb domain
PfamPF002499.0E-151461IPR001005SANT/Myb domain
CDDcd001671.13E-91661No hitNo description
PROSITE profilePS5129425.32562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2665116IPR009057Homeodomain-like
SMARTSM007171.8E-1466114IPR001005SANT/Myb domain
PfamPF002491.5E-1567112IPR001005SANT/Myb domain
CDDcd001671.49E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTSE EDHILTNYIQ LYGHGNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TPDEEDTIIE LHNMLGNRWS TIAAKLPGRT DNEIKNVWHT HLKKRVMAMM  120
TPTKQNDDQQ NNPLPPPGTN KRRSSAGKKT KSISSIIKSD QAAGEPANLT TAMVPAECSS  180
DDASSLTTAE NNDAVKAEDI SSREENLNNE EMDESFWSEV LSAENTSSVV EPELGSGLFG  240
FESLVSSSSV VGGDDQEGEG AAAAALLGDD SNVDYSSMDF WYNFLTGDGE LSQLPPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033889
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818400.11e-91PREDICTED: myb-related protein Myb4-like
TrEMBLA0A2I4EG802e-90A0A2I4EG80_JUGRE; myb-related protein Myb4-like
STRINGLus100338890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-75myb domain protein 14