PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033963
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 327aa    MW: 35742.9 Da    PI: 6.2323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033963genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.3e-1857105355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Lus10033963  57 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 105
                  56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.61356113IPR001471AP2/ERF domain
SMARTSM003808.5E-3256119IPR001471AP2/ERF domain
CDDcd000189.60E-2856112No hitNo description
SuperFamilySSF541714.64E-2057113IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-2857112IPR001471AP2/ERF domain
PRINTSPR003671.2E-75768IPR001471AP2/ERF domain
PfamPF008473.7E-1159105IPR001471AP2/ERF domain
PRINTSPR003671.2E-77995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSTSSDKPFN LLHTTSPTST ATTGTFTILQ RNTSPSSSSP PTTERRGRRK QAEPGRFLGV  60
RRRPWGRYAA EIRDPTTKER HWLGTFDTAQ EAALAYDRAA LSMKGTQART NFIYTTTSTP  120
PNNIATNINY NNNNATNFHY SLPSPYDPHQ ITFLPPSHDD HNINHTPFLI NYDSQTYNNN  180
NINNHAVGPE RSSISFPHVD DYQEESNSGY LGCIVPDNCL RPPSSSSSSP GSSGNPKTAS  240
PFENVNNSIW GGGVEKDSSS PPLSSWERYD SGDLSAVINS CRTMRVDDVC MESGGEGSYG  300
ELMAAGQSYS AASYNMGPVD FGYSMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2047112571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033963
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593355.14e-65ethylene-responsive transcription factor ERF086-like
RefseqXP_021634960.13e-65ethylene-responsive transcription factor ERF086-like
TrEMBLA0A2C9UBU61e-68A0A2C9UBU6_MANES; Uncharacterized protein
STRINGLus100339630.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.15e-47ERF family protein