PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10034208

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 220aa MW: 23605.6 Da PI: 7.265

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10034208	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.3	2.2e-37	34	134	1	100
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrr+Ca++ C+++pyf +p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA +r+rdPv+G+vg i+ lq+q+++l++ela+l Lus10034208 34 PCAACKLLRRRCAAQeCPFSPYFSPLEPHKFAYVHKVFGASNVSKMLMEVGESQRWDAANSLVYEASVRLRDPVHGCVGAISLLQHQIHSLESELAAL 131 7*********8655******************************************************************************99 PP DUF260 98 kee 100 ++e Lus10034208 132 RAE 134 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.706	33	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-37	34	132	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MMEKSDDAAE RVMMLSSSSS SQAQASGGLN TITPCAACKL LRRRCAAQEC PFSPYFSPLE 60 PHKFAYVHKV FGASNVSKML MEVGESQRWD AANSLVYEAS VRLRDPVHGC VGAISLLQHQ 120 IHSLESELAA LRAEILRHRY NAAAATSSPS TMDIVNTTTT SPMIINSPPP PVDFSHDARG 180 HGPVLLPPIT LSTASSSSSS PSNRYSSISN NDHNIPFYG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-41	34	156	11	130	LOB family transfactor Ramosa2.1
5ly0_B	7e-41	34	156	11	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10034208

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167556.1	3e-70	LOB domain-containing protein 15-like
Swissprot	Q9AT61	1e-63	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3B5ZSF7	7e-69	A0A3B5ZSF7_WHEAT; Uncharacterized protein
STRING	Lus10034208	1e-161	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	5e-53	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Lus10034208

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]