PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10034461

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 471aa MW: 51215 Da PI: 7.234

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10034461	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	123	183	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss Lus10034461 123 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSS 183 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	111	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	125	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MHEIQLQTPT KDPAIKLFGK NLPFHSDAAD PLVISAGDPS SSNRNRVEVD KKTNKDCFPD 60 GEDTAEQDHG AMDDAEASAG TDNPKTSSVS EDDSSKSKSS KAADKEQGET ADISQEKPVL 120 KKPDKILPCP RCNSMDTKFC YYNNYNVNQP RHFCKACQRY WTAGGTMRNV PVGAGRRKNK 180 NSSTHYRHIT ISEALEAARL EAPNDSTNHL QTRNGRVLSF GVDTTPVCDS MASLLNLADP 240 KKVLNGFHSS ADKPKVGDQN GDACSNGSME EGGKPCSQEQ PFVQNNINGF SPHPIPCLPG 300 VPWHYPWNPM MPQLAFCPPG FAMSFYPPPP HHPHAAYWNN IPVQTPQYSS SSSNDKAPHS 360 SCPISPTLGK HSREGEAAKP EDLEKDELSR HKNGSSVLVP KILRIDDPTE AAKSSIWATL 420 GIKNESLGSG GLFKGFQRKG DEKNHVAETS PVLVANPAAL SRSMKFRESS *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MHEIQLQTPT KDPAIKLFGK NLPFHSDAAD PLVISAGDPS SSNRNRVEVD KKTNKDCFPD  60
GEDTAEQDHG AMDDAEASAG TDNPKTSSVS EDDSSKSKSS KAADKEQGET ADISQEKPVL  120
KKPDKILPCP RCNSMDTKFC YYNNYNVNQP RHFCKACQRY WTAGGTMRNV PVGAGRRKNK  180
NSSTHYRHIT ISEALEAARL EAPNDSTNHL QTRNGRVLSF GVDTTPVCDS MASLLNLADP  240
KKVLNGFHSS ADKPKVGDQN GDACSNGSME EGGKPCSQEQ PFVQNNINGF SPHPIPCLPG  300
VPWHYPWNPM MPQLAFCPPG FAMSFYPPPP HHPHAAYWNN IPVQTPQYSS SSSNDKAPHS  360
SCPISPTLGK HSREGEAAKP EDLEKDELSR HKNGSSVLVP KILRIDDPTE AAKSSIWATL  420
GIKNESLGSG GLFKGFQRKG DEKNHVAETS PVLVANPAAL SRSMKFRESS *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10034461

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021682247.1	1e-175	cyclic dof factor 3
TrEMBL	A0A067K585	1e-173	A0A067K585_JATCU; Uncharacterized protein
STRING	Lus10034461	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-106	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Lus10034461