PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034470
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-X1
Protein Properties Length: 1101aa    MW: 119029 Da    PI: 8.0789
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034470genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.52.1e-06360377118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H C + CH+GpC++C
  Lus10034470 360 CGNHECDEVCHPGPCGSC 377
                  ****************** PP
2zf-NF-X121.74.2e-07418435118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H C+ lCH G+CppC
  Lus10034470 418 CGIHNCENLCHSGDCPPC 435
                  ****************** PP
3zf-NF-X118.64e-06514532119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG+H+C++lCH G CppC 
  Lus10034470 514 CGQHSCESLCHSGHCPPCL 532
                  ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.34E-6120191No hitNo description
PROSITE profilePS500168.671126187IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.406129185IPR001841Zinc finger, RING-type
PROSITE patternPS013590129184IPR019786Zinc finger, PHD-type, conserved site
CDDcd060084.61E-5218279No hitNo description
SMARTSM004380.39241259IPR000967Zinc finger, NF-X1-type
PfamPF014221.8243258IPR000967Zinc finger, NF-X1-type
CDDcd060081.20E-11286334No hitNo description
PfamPF014220.0051296313IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0019296315IPR000967Zinc finger, NF-X1-type
CDDcd060082.62E-9350393No hitNo description
PfamPF014227.5E-5360377IPR000967Zinc finger, NF-X1-type
SMARTSM004384.7E-4360379IPR000967Zinc finger, NF-X1-type
CDDcd060081.62E-13408456No hitNo description
PfamPF014221.3E-6418435IPR000967Zinc finger, NF-X1-type
SMARTSM004381.2E-5418437IPR000967Zinc finger, NF-X1-type
PfamPF0142218476487IPR000967Zinc finger, NF-X1-type
SMARTSM00438270476510IPR000967Zinc finger, NF-X1-type
CDDcd060081.55E-8504547No hitNo description
PfamPF014229.8E-5514531IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4514533IPR000967Zinc finger, NF-X1-type
CDDcd060083.26E-5561609No hitNo description
SMARTSM004380.91571589IPR000967Zinc finger, NF-X1-type
PfamPF0142212577588IPR000967Zinc finger, NF-X1-type
PfamPF014220.034624639IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15624655IPR000967Zinc finger, NF-X1-type
PfamPF014222.5657684IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0034664685IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3301.3E-4900950IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1101 aa     Download sequence    Send to blast
MSSQPRGDRR DRSRSSSQTG QQRWIPRGSA PSTVSVNNNT PPATFNPSYV DGRGEQSNAN  60
PNPVPREPRP KGASNAPRSY VVGRPVNNHR RDKQREKGDT HAVKELVDPN LPQLVQEIRE  120
KLANGTAECM ICYDMVRRSA PIWSCSSCYS IFHLHCIKKW VRAPTSIDMS ADKNQGFNWR  180
CPGCQYVQLT PLKEIKYLCF CGKRTDPPSD LYLTPHSCGE PCGKPLERHL PGNLETKEDS  240
CPHNCVLQCH PGPCPPCKSF APPCLCPCGK KTITTRCSDR QSVLTCGQQC EKLLDCQRHR  300
CERMCHVGPC DPCEILVTAS CFCKKKQEVV SCGDMSVKGE VNVKDGVFSC NSSCGKLLAC  360
GNHECDEVCH PGPCGSCALM PGRVKSCYCG KTSLQEERKS CLDSIPNCSQ VCSKLLPCGI  420
HNCENLCHSG DCPPCMVSVS QKCQCGSTSR IVACYQTSAE SEKFKCDKPC GRKKNCGRHR  480
CSERCCPLSN PNPVRSEDWD PHFCQMACGK KLRCGQHSCE SLCHSGHCPP CLETIFSDLT  540
CACGRTSIPP PLPCGTPPPS CQLPCSVPQP CGHLASHSCH YGDCPPCSVP VAKECVGGHV  600
VLKNIPCGSK DIRCNKLCGK TRQCGLHACG RTCHPAPCDS SGTTGAGVAR VSCGQTCGAP  660
RRDCRHTCAA LCHPSSPCPD VRCKLTISCS CGRITASVPC DAGGTNAGYS ADTVFDASIA  720
HKLPAPLQPV ESTGSRIPLG QRKLTCDEEC AKSERKRVLA DAFDIGTPNF EALHFGENSQ  780
VTELIVDLYR RDPKWVIGVE ERCKYLVLGK SKGTVGGLKV HVFCPMMKDK RDAVRLIAER  840
WKLSINVAGW EPKRFVVLHA TPKSRPPSRV ICVKGTTTNP HSPAFDPLVD MDPRLVVSFL  900
DLPREADVSS LVLRFGGECE LIWLNDKNAL AVFSDPARAA TALRRLDHAS AYYGVAVVLQ  960
NTGPGGAWGA MGTSAREGGG VSATLKGASA WKKAVTRVDF WGGEEQRPVS SMDAQSSPWK  1020
QKEAAVTASI NRWSVLDSES SSSNGASLIG VKKQGGSHSG SGSGSSLLPH DAVVPEGESA  1080
EVVDDWEKAY DMENDVQQQQ *
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034470
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614783.10.0LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2C9VN510.0A0A2C9VN51_MANES; Uncharacterized protein
STRINGLus100344700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1