PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034700
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 208aa    MW: 23545.8 Da    PI: 8.6379
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034700genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.91.7e-22401801128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..lelee.v.ikevdiykvePwdLpkkvkaeekewyfFskrdkkya.....tgkrknratk..sgyWkatg 87 
                  lp+G+rF+Ptd elv++yL +k+ +    l+++    i+ ++ +++ P+dL  + +  e+ew+fF++ d ++a     +g  ++ra k   g+W  +g
  Lus10034700  40 LPVGYRFRPTDVELVKHYLMEKAFNPAspLPAFIgLdIDAFEFCSMTPSDLVPRSRRAEREWFFFVRLDLENAsnqnfEGMMSKRAGKkgVGFWI-SG 136
                  799*******************9988755333333359999**********656677899*******9988884444445577776552267898.68 PP

          NAM  88 kdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                   +k +++++g+l   k  L++    + ++++ +kt+W ++eyrl
  Lus10034700 137 LKKMIYDSTGALLAYKSELTYCvasTVSSSRQRKTHWKLDEYRL 180
                  88*******************977666888889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-2434197IPR003441NAC domain
PROSITE profilePS5100524.92640199IPR003441NAC domain
PfamPF023652.7E-1541180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGIVMEHDHD SAISHLQSSS PQPFEKEAAA EEISVPGGGL PVGYRFRPTD VELVKHYLME  60
KAFNPASPLP AFIGLDIDAF EFCSMTPSDL VPRSRRAERE WFFFVRLDLE NASNQNFEGM  120
MSKRAGKKGV GFWISGLKKM IYDSTGALLA YKSELTYCVA STVSSSRQRK THWKLDEYRL  180
HSPLNLRGQE WLLARLKRGS DYEKKYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-134020415174Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100347001e-154(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144391218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.19e-18NAC domain containing protein 58