PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034949
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 312aa    MW: 33473.1 Da    PI: 6.7034
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034949genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1865115155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Lus10034949  65 PVYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKG 115
                  68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1265115IPR001471AP2/ERF domain
SMARTSM003801.5E-3466129IPR001471AP2/ERF domain
PROSITE profilePS5103222.8466123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-3166124IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2166124IPR016177DNA-binding domain
PRINTSPR003675.3E-106778IPR001471AP2/ERF domain
CDDcd000181.14E-2967123No hitNo description
PRINTSPR003675.3E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAAHSNSEST TYSCNIINSP SSPSTPSSSS TAKTNPETEQ LPKPNKLKRG REGDCGGGGS  60
GSKHPVYRGV RMRTWGKWVS EIREPRKKSR IWLGTFATPE MAARAHDVAA LSIKGGAAIL  120
NFPRLASSLP RPVSNSPRDV QAAATKAASI HFPTATSTTS DDGNTSNCSN LASSTSACSS  180
SAEDHHDPST PSSSTVAAEA DELCQIVDLP KLGSEEFVLY GDSWLCNDDQ TWYADYGGGV  240
GGYYFSDETR HLVTMEESSS SNCGGFGAFF VETLVSYSII IIKLITDINY CYYIRTPYTI  300
LSRGFSLHFQ K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2154123272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034949
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324441.27e-66ethylene-responsive transcription factor ERF043
SwissprotQ9LYD34e-50DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLB9ILS42e-64B9ILS4_POPTR; Uncharacterized protein
STRINGLus100349490.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]