PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035129
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 245aa    MW: 27170.3 Da    PI: 5.8669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035129genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-182675255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Lus10035129 26 RFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTADEAALAYDRAARSMRG 75
                 678******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.15E-302582No hitNo description
PROSITE profilePS5103220.5082683IPR001471AP2/ERF domain
SMARTSM003802.4E-332689IPR001471AP2/ERF domain
PfamPF008471.3E-112775IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-282783IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-212784IPR016177DNA-binding domain
PRINTSPR003677.3E-82738IPR001471AP2/ERF domain
PRINTSPR003677.3E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MNKNSNGGKR GKKQQQESGS TAAETRFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAD  60
EAALAYDRAA RSMRGPRART NFVYSDTPAG CSVTSILSPD QQQQQQNYNY NHNHHHELSS  120
MVDNNNCNYY QEGMPVGQDN NYYSTSGNIA ATTNINSYHQ QCQYDELPPL PSCEVGSMSI  180
NVSSNFDDED MIMGTTSGYY NFGYDDRMTS HSPLFSTMPS VSSGDFGGSS SASSSSAFNY  240
FFSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-192782359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682226.18e-58PREDICTED: ethylene-responsive transcription factor LEP
TrEMBLA0A059AQP32e-54A0A059AQP3_EUCGR; Uncharacterized protein
STRINGLus100351290.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.19e-33ERF family protein