PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035205
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 252aa    MW: 28356.4 Da    PI: 8.8814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035205genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002697118323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  C+ C++ ++++ +L  Hi+  H
  Lus10035205  97 CSVCHRAYPTSRLLSLHISEaH 118
                  ******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355836993IPR015880Zinc finger, C2H2-like
SMARTSM003556.995118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097118IPR007087Zinc finger, C2H2
SMARTSM003550.02133158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAMMVVDIDP KSESGFPYWN PVRRRFSPES PFFESGNIER ELLAKQIALD LGEDQKQLLS  60
SMDEDAEVMF CPIAGCRAPL STMGFENHYI SQHTAACSVC HRAYPTSRLL SLHISEAHDS  120
FFKAKVARGY PMYECLVEGC GLKFKSYKSR QKHLVDKHKF PASYDFFKKG HHLSKKAREK  180
IHRNKTTTTT TRKNDEEGSS KMEADEEVEN LTSALSKMTT GSTPKSVSFG RASLFGLLLY  240
CCLVTVSKKS R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035205
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070284.11e-103zinc finger protein 511
TrEMBLA0A067LCT11e-101A0A067LCT1_JATCU; Uncharacterized protein
STRINGLus100352050.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.15e-91zinc ion binding;nucleic acid binding;zinc ion binding