PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035400
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 234aa    MW: 26264.1 Da    PI: 6.2996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035400genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.55.4e-19231602127
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlsk 95 
                    G+ F+Pt++ l  ++L +k+++ + ++ e+ ik++d+y++ePwd+ ++++++e+ ++yf++k ++k +++k   r  a  +g W+    +++v ++
  Lus10035400  23 HSGIVFRPTEKHLF-QFLIRKIRRGDaVDDEDPIKDLDVYSMEPWDIWNRFSEDERcDLYFYTKLKRKPSNNK-IDRgvAGGKGLWQGESAKRDVQVN 118
                  5799*********9.889999888775666678**************978777666688*****999877655.555355669******999999998 PP

          NAM  96 ....kgel.........vglkktLvfykgrapkgektdWvmheyr 127
                      +  +           + + + + +g++ + e  +W+m eyr
  Lus10035400 119 ytrkQ--AsrvlsrcilNIVVREFRYSNGEKAE-EDGRWIMTEYR 160
                  65432..25655555544444556666666666.7899******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-1614176IPR003441NAC domain
PROSITE profilePS5100520.73122177IPR003441NAC domain
PfamPF023659.7E-925160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDDEAHAALQ ERRRAFFASL NLHSGIVFRP TEKHLFQFLI RKIRRGDAVD DEDPIKDLDV  60
YSMEPWDIWN RFSEDERCDL YFYTKLKRKP SNNKIDRGVA GGKGLWQGES AKRDVQVNYT  120
RKQASRVLSR CILNIVVREF RYSNGEKAEE DGRWIMTEYR ENPAGAVDWV IFRLRRDGKA  180
VASSPSIGSP ATSESGGSAC CTDDDDDPKR AKISDADFQG GGGASSSGNV DNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100354001e-172(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.15e-12NAC domain containing protein 76