PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035504
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 152aa    MW: 16563.3 Da    PI: 9.0067
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035504genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.46.3e-382184262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg...grrknkkss 62
                 ++++l+cprCds+ntkfCyynny+lsqPr+fCk CrryWtkGGalrn+PvGg   g+rkn k+s
  Lus10035504 21 EQEQLNCPRCDSSNTKFCYYNNYNLSQPRFFCKDCRRYWTKGGALRNIPVGGgggGTRKNAKRS 84
                 57899*********************************************86222689998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.4E-322380IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-202583IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.412579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MQDPTSEFPM IHQQPAPPFP EQEQLNCPRC DSSNTKFCYY NNYNLSQPRF FCKDCRRYWT  60
KGGALRNIPV GGGGGGTRKN AKRSSNSNQK RANPDPTPDS SPSVTRRLVS EPTSPPSSSS  120
VPLGADQDPT RLYGPEPGRD TGLGSVLSQF P*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035504
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021645559.12e-48dof zinc finger protein DOF3.1-like
RefseqXP_021645560.12e-48dof zinc finger protein DOF3.1-like
SwissprotO821553e-39DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A3Q9EDL77e-46A0A3Q9EDL7_POPTO; DOF zinc finger protein 1
STRINGLus100355041e-107(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61813351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-29DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]