PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035518
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 289aa    MW: 32268.2 Da    PI: 7.6523
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035518genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.5e-14144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + +++G+g+W+ I+r +  +Rt+ q+ s+ qky
      Lus10035518 144 PWTEEEHRQFLLGLEKYGKGDWRNISRNFVMTRTPTQVASHAQKY 188
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512935.282487IPR017884SANT domain
SMARTSM007175.7E-42585IPR001005SANT/Myb domain
SuperFamilySSF466893.09E-72890IPR009057Homeodomain-like
CDDcd001673.70E-52882No hitNo description
Gene3DG3DSA:1.10.10.602.4E-12134189IPR009057Homeodomain-like
PROSITE profilePS5129420.068137193IPR017930Myb domain
SuperFamilySSF466891.72E-17138193IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-18140192IPR006447Myb domain, plants
SMARTSM007177.8E-13141191IPR001005SANT/Myb domain
PfamPF002493.3E-12144188IPR001005SANT/Myb domain
CDDcd001672.16E-11144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDRGMEILSP ASYLQNSGWL FQESKRPKWT SEENKRFENA LALYDRDTPD RWGAGVGVGR  60
RKVAALIPGK TVGDVIKQYR ELEEDVSDIE AGLIPVPAGY DVGSADSFTL ELVNSHSYDE  120
LKEFYSPGGK RTRACEQERK KGVPWTEEEH RQFLLGLEKY GKGDWRNISR NFVMTRTPTQ  180
VASHAQKYFI RQSTGGKDKK RSSIHDITTV NPPTDSKQQV HSSPDHSTTT MDTKLDTNVM  240
MGGANVCGMM SSSSPYGLQL QEQKSLILMG GPSSYGLVYQ PMQSMQNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-122497771RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035518
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621236.11e-122transcription factor DIVARICATA-like
SwissprotQ8S9H73e-90DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2I4KKD51e-121A0A2I4KKD5_POPTR; MYB family protein
STRINGLus100355180.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-99MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]