PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035583
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 229aa    MW: 26433.1 Da    PI: 8.6386
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035583genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-1958111356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+ ++t++qle Le+ F+++ +++ +++ +L+++lgL  rq+ vWFqNrRa++k
  Lus10035583  58 KKKRLTNHQLESLETNFQEEIKLDPDRKMKLSRELGLHPRQIAVWFQNRRARWK 111
                  56679************************************************9 PP
2HD-ZIP_I/II1149.6e-3757147191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+++q+++LE++F+ee kL+p+rK++l+reLgl+prq+avWFqnrRAR+k+kqlE+ y++Lk ++d +++e+++L++ev +Lre l
  Lus10035583  57 QKKKRLTNHQLESLETNFQEEIKLDPDRKMKLSRELGLHPRQIAVWFQNRRARWKAKQLERLYDSLKLEFDCVSKEKHKLQEEVMKLREML 147
                  69**************************************************************************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.42E-1935115IPR009057Homeodomain-like
PROSITE profilePS5007116.60153113IPR001356Homeobox domain
SMARTSM003891.2E-1556117IPR001356Homeobox domain
CDDcd000863.45E-1457114No hitNo description
PfamPF000461.2E-1658111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-2059120IPR009057Homeodomain-like
PRINTSPR000316.1E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000316.1E-593109IPR000047Helix-turn-helix motif
PfamPF021832.0E-8114147IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDMKQLAEAA AYHHQQQQGM TMSPATSSEK TMSYGSSSCG SYAANQQHQM MMMMMDQKKK  60
RLTNHQLESL ETNFQEEIKL DPDRKMKLSR ELGLHPRQIA VWFQNRRARW KAKQLERLYD  120
SLKLEFDCVS KEKHKLQEEV MKLREMLGEQ EGTMNKHQVS TAVYTDFSKM EESTSAGRGS  180
SRKMMIIGQH HMLTTRNENS HDMVVDEYNP SIVVSSPTYL SVLPSYNP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKAKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035583
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018863.12e-61PREDICTED: putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2P5C5323e-60A0A2P5C532_PARAD; Octamer-binding transcription factor
STRINGLus100355831e-171(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-44homeobox 51