PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035679
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family BES1
Protein Properties Length: 735aa    MW: 82623.5 Da    PI: 6.6575
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035679genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822144.59.1e-45592052134
       DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.s 96 
                   +g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+ L+reAGw+ve+DGttyr++s+p+   + ++ g   +a ++  ++ +
  Lus10035679  59 VKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLASLAREAGWTVEADGTTYRQSSHPPplPHLATYGGGVRAVQSPTISaT 156
                  6899*********************************************************************9988444444444444333333335 PP

       DUF822  97 slkssalaspve.sysaspksssfpsps.sldsislasa.........a 134
                  sl+++++++ ++ ++++ ++ + ++sp+ slds+ +++           
  Lus10035679 157 SLQACSVEAALDgQQHPALRMDGSLSPAaSLDSVVISDRdtrnegekfP 205
                  8888888777663778888888888885268888888775554444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.6E-4660214IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.98E-152234675IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.4E-167237669IPR013781Glycoside hydrolase, catalytic domain
PfamPF013738.4E-85259629IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-55274288IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-55295313IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-55317338IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-55410432IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-55483502IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-55517533IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-55534545IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-55552575IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-55588610IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MSTPIDDQNL LLDPYSQPLP TSSSNSHQHP QPQLRRPRGF AATAAAAASD ANGSNVSGVK  60
GKREREKEKE RTKLRERHRR AITSRMLAGL RQYGNFPLPA RADMNDVLAS LAREAGWTVE  120
ADGTTYRQSS HPPPLPHLAT YGGGVRAVQS PTISATSLQA CSVEAALDGQ QHPALRMDGS  180
LSPAASLDSV VISDRDTRNE GEKFPNSSPI NSVDCLDADQ LIQDVRSSEH VNDFTGSQYV  240
PVYVMLANGF INNFSQLIDS QGVRQELSRL KSLDVDGIVV DCWWGIVEAW SPQKYIWSGY  300
RELFHLVREF NLKLQVVMAF HEYGRNESSE VLISLPQWVL EIGKENRDIF FTDREGRRST  360
ECLSWGVDKE RVLKGRTGIE VYFDFMRSFR TEFDDLFVEG IITAVEISLG ASGELRYPSF  420
PERMGWRYPG IGEFQCYDKY LQRNLQRAAK LQELSVWAGS PDNAGQYNSR PHETGFFCER  480
GDYDSYFGRF FLRWYTQLLI SHADDVLSLA ALAFEDTKLI VKIPAVYWWY KTASHAAELT  540
AGFYNPSNQD GYSPVFKALK KHSVVVKLAC PGLQVSGHDE ALSDPEGLCW QVLNAAWDRG  600
LMVAGTNMLS LYGREGYMKV VDMAKPKNDP DHHHFSFFIY QQSSPLLQGM VCFPELDYFI  660
KCMHGCVLKV HKTLYNNFKE YKSVNDMRGC VGNMHHGLDL GVIPKLRRIC GLTGNLTLAQ  720
ELAEIILCVF SHEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wds_A1e-11823862710401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594907.10.0beta-amylase 8 isoform X3
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2K2B4Z10.0A0A2K2B4Z1_POPTR; Beta-amylase
STRINGLus100356790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]