PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035841
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 221aa    MW: 24894.8 Da    PI: 8.4842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035841genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.2e-28148205259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYG+K+vk++++pr+YY+C s gC+vkk+ver++ed ++v++tYeg Hnh+
  Lus10035841 148 ADGFKWRKYGKKSVKNTPYPRNYYKCPSVGCNVKKRVERDREDSSFVITTYEGVHNHH 205
                  7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30135206IPR003657WRKY domain
SuperFamilySSF1182907.72E-26139206IPR003657WRKY domain
PROSITE profilePS5081128.552142207IPR003657WRKY domain
SMARTSM007741.3E-30147206IPR003657WRKY domain
PfamPF031061.2E-22149205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNLIRPPPPP PPPPCQNPNP NCSKSNHNHP FPPQQPFRQF PDPLDFQFSD FLLPPDHHPD  60
HGGFEGDEEI DNIFGGNYSS PQSNITATSP LQIGSDGSCN SFSSWTMIGN EAEGSGRMRK  120
VEEQKKRKGG VVVDRVAFRT KSEVDVMADG FKWRKYGKKS VKNTPYPRNY YKCPSVGCNV  180
KKRVERDRED SSFVITTYEG VHNHHHHQIS PSKVQVELLR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23135204271WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035841
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100358411e-163(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.17e-35WRKY DNA-binding protein 50