PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035955
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 349aa    MW: 37865.6 Da    PI: 8.4921
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035955genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.6e-3945101662
       zf-Dof   6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +kcprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rk+kk +
  Lus10035955  45 IKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKSKKLK 101
                  79***************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.0E-334599IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-224590IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3574599IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104783IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSGIHLHHHQ QQQQQNEKEV KVNKAAASSS SSTAAAAADE GVVIIKCPRC DSPNTKFCYY  60
NNYSLSQPRH FCKTCRRYWT KGGALRNVPV GGGCRKSKKL KSSSSYSSSS SASAAAGATS  120
SSSSDISGFK FFSPPPTNNT MDFNVKGLSL MSPPGPSTYN SHHHNNHPFG MDLSVSSLEP  180
PYGMGGSMNV NTSLASSIES LSCMNQDLHW KLQQQRLGLM LKEDGTAGGV VEAEKAPLQP  240
ILFRELNINN TSRQQQQHHQ QGRAGAGGGD HHETEWFFGN SSYVQQVTSA AAADHHQAAA  300
APSNNNKSVN TNANDEIQQQ HHQIETNWNV KGQQQQVHAW GDLHPYNH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035955
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330033e-31AC133003.3 Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence.
GenBankAP0149593e-31AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126113e-31CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426240.13e-72dof zinc finger protein DOF5.7
SwissprotQ9LSL65e-59DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLV4SKT98e-71V4SKT9_9ROSI; Uncharacterized protein
STRINGLus100359550.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.12e-45Dof family protein
Publications ? help Back to Top
  1. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]