PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036068
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 180aa    MW: 20630.9 Da    PI: 9.4928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036068genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-1068111755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  + Er+R ++i +++  Lr l+Pk +      K++Ka+i   Av+YI +Lq
  Lus10036068  68 ILERNRKNKIQQRLCALRALVPKiS------KMDKASIIGDAVHYIIDLQ 111
                  68*********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1560131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.9761110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-767116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-868111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1468128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-868115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MELLQFQRNQ LGFTLMLKPI LSYSALSASA ATSSSKPVPK LTDSSVNTKV AKSNEKPTRK  60
RPSYKNLILE RNRKNKIQQR LCALRALVPK ISKMDKASII GDAVHYIIDL QNERKSLEEE  120
LDQLEEQEEY YCDYMKQETS FTICFTPALI NEYKKQVVSV MHVEMRNIRV HYETGGILL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036068
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100360681e-130(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.22e-16bHLH family protein