PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036110
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YC
Protein Properties Length: 250aa    MW: 27381.9 Da    PI: 10.2999
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036110genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC34.83.6e-111392291198
        NF-YC  11 ekatdfknhelPlarikkilkad.edvkm..isaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                  ++++d    ++P+ari++i+ ++ ++++      ++  ++ +a elf+ +++ +    a + +++tl    +a++v++++ fdfl d vp 
  Lus10036110 139 NQVNDGTMCRFPMARIRRIMTSEtPNLQTglEGQDVVFVVNRATELFLEKFAEQGHRSAVNDRKKTLDYKHLATVVSQSKEFDFLSDFVPL 229
                  5667777889**********99734554311456788899************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.9E-11148214IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.3E-19149228IPR009072Histone-fold
SuperFamilySSF471131.38E-14170228IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MASSKSSKKE EDNKMQKNGK ALGISKSLTK GKKSSLASKS KSKSSQKKTT PVKATNKAKT  60
PTKPKKEENS KKKKEPEPEP EPEELVVPSS SCDSEAGGGE ARVDEAKGRS RNSMSSKAEN  120
GKMKKQNVRD EINGDEDGNQ VNDGTMCRFP MARIRRIMTS ETPNLQTGLE GQDVVFVVNR  180
ATELFLEKFA EQGHRSAVND RKKTLDYKHL ATVVSQSKEF DFLSDFVPLK VKASDALEAI  240
KSAEKQQQG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8294991e-119EU829499.1 Linum usitatissimum clone LU0025C09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609413.15e-43protein FAM133B
TrEMBLA0A2C9VZ111e-41A0A2C9VZ11_MANES; Uncharacterized protein
STRINGLus100361101e-180(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.16e-29nuclear factor Y, subunit C10