PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036116
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 489aa    MW: 52782.6 Da    PI: 9.577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036116genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Lus10036116  6 FICEICNKGFQRDQNLQLHRRGH 28
                 89*******************88 PP
2zf-C2H211.30.001183105123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Lus10036116  83 WKCDKCSKKYAVQSDWKAHSKIC 105
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.022628IPR015880Zinc finger, C2H2-like
PfamPF121715.8E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.845628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355974878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-778103No hitNo description
SMARTSM0035515083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSKT EVVKRKVYIC PEKTCVHHDP  60
GRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR  120
KDSFITHRAF CDALAEESAR FTSVSAANFR NDLMNPSLIH HQSGAGLSQF STMFRPELSA  180
GLESNVEGGN NIMQKPRHNT ISNNNNTNNN MPMWLDPMAA SAGGSGGGSS NNNNSQNPFG  240
FSQELVQPNM FGSINQWAPL NNSNKYQEGA AYGSTGGSLS GMGLTRGTIM KEEEENNNNN  300
NNNNKRDMLL SSSSETALYS HHHHQAAATA HMSATALLQK AAQMGSTRSS NANAGTGGAG  360
LMMTSSLSAM MPGFGNNNNN KSSSSGESLK FLSGGNQLNE LMSSLSSSTE RVMMSEFGGG  420
EAAAGGFTRD FLGVGAGENN EGGRRPLMLQ QELARFAAMG SSSSNNNSAA AMELHPNFRS  480
SSSSAGLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-3779145369Zinc finger protein JACKDAW
5b3h_F7e-3779145369Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628439.11e-150protein indeterminate-domain 9-like
RefseqXP_021628440.11e-150protein indeterminate-domain 9-like
RefseqXP_021628441.11e-150protein indeterminate-domain 9-like
TrEMBLA0A251JWC51e-149A0A251JWC5_MANES; Uncharacterized protein
STRINGLus100361160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-87C2H2-like zinc finger protein