PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10036172

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 253aa MW: 27737.1 Da PI: 9.0368

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10036172	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.4	9.7e-36	46	102	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++ l+cprCdstntkfCy+nny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ Lus10036172 46 SEPLNCPRCDSTNTKFCYFNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKR 102 6789**********************************************9976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	43	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	48	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.354	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MGLRTKQVSK DLVLDWSQST LANPPPPNQT ARKQHQKNPD QSQSQSEPLN CPRCDSTNTK 60 FCYFNNYNKS QPRHFCKACK RHWTKGGTLR NVPVGGGRKN KRFSKPTGGN NIGKIINKVS 120 PKMVIQAQRP KQSIQENRAC PNDVVLQGLM TSSPLPPPEI GVNFSSGEMG SSIFAQGLSF 180 TYSAAGFEFP GSSSATWQVP STISDEKSVV INDVVATTAN DASYWNWDDM DSFVSGADLN 240 IPWDIDDPEV KP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10036172

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX018624	0.0	KX018624.1 Linum usitatissimum clone 356B4_FAD3B_CDCBethune_27, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021599985.1	7e-59	dof zinc finger protein DOF1.4-like
TrEMBL	A0A2C9U4V3	2e-57	A0A2C9U4V3_MANES; Uncharacterized protein
STRING	Lus10036172	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Lus10036172