PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10036282

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

RAV

Protein Properties

Length: 322aa MW: 36983.8 Da PI: 9.2212

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10036282	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33	1.5e-10	53	100	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV ++g W ++I+ + +r++lg+f +++eAa a++ a++kl+ Lus10036282 53 SKFKGVV-PQQNGHWGCQIYA------NhQRIWLGTFKSEKEAAMAYDSAALKLR 100 799*6.666899999......44******99**********98 PP
2	B3	82.3	4.6e-26	175	267	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+ltpsdv+k++rlv+pk+ a+ h +g++e +++l+++d+s +W+++++y+k+s+++v+t+GW++Fv++n+Lk++D++ F+ Lus10036282 175 FHKELTPSDVSKLNRLVIPKRSATMHfpkvpetEGVEEDNMQLSFYDRSLkTRWSFRYCYWKSSQSFVFTRGWNRFVRENNLKAKDTISFHEC 267 89*****************************99999*****776489***********************************932 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	7.85E-14	53	111	IPR016177	DNA-binding domain
Pfam	PF00847	9.3E-6	53	100	IPR001471	AP2/ERF domain
CDD	cd00018	1.04E-20	53	112	No hit	No description
SMART	SM00380	2.6E-18	54	116	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-16	54	110	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.476	54	110	IPR001471	AP2/ERF domain
Gene3D	G3DSA:2.40.330.10	5.0E-29	172	269	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-24	174	267	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.83E-22	174	265	No hit	No description
Pfam	PF02362	1.5E-22	175	267	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.351	175	284	IPR003340	B3 DNA binding domain
SMART	SM01019	6.8E-17	175	284	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MFQQDPRCII SCRELAAFNE VSDANSRTQR LDDPSSRSTA NKRPRYTSSA FASKFKGVVP 60 QQNGHWGCQI YANHQRIWLG TFKSEKEAAM AYDSAALKLR SSGDTCRNFP VTPATSQEPN 120 FQCNYSTEAV LNMIKDGTYQ SRFGEFIAQT VGTELSLNFL RPRTDNGGLL CKELFHKELT 180 PSDVSKLNRL VIPKRSATMH FPKVPETEGV EEDNMQLSFY DRSLKTRWSF RYCYWKSSQS 240 FVFTRGWNRF VRENNLKAKD TISFHECERH HGATSERFYM IDVNNRQPQL QLGCYPGMVT 300 ELQQETQMKS KGFMLFGVRI V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	1e-25	171	264	10	100	DNA-binding protein RAV1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10036282

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024446356.1	1e-114	AP2/ERF and B3 domain-containing transcription factor At1g51120
Refseq	XP_024446357.1	1e-114	AP2/ERF and B3 domain-containing transcription factor At1g51120
Swissprot	Q9C6P5	2e-87	RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBL	A0A3N7GB04	1e-112	A0A3N7GB04_POPTR; Uncharacterized protein
STRING	Lus10036282	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5000	31	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-89	RAV family protein

Link Out ? help Back to Top
Phytozome	Lus10036282