PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036392
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 341aa    MW: 37182.7 Da    PI: 9.3273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036392genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-1380124147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      Lus10036392  80 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 124
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1674130IPR009057Homeodomain-like
PROSITE profilePS5129415.40875129IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-678130IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1878127IPR006447Myb domain, plants
SMARTSM007175.3E-1179127IPR001005SANT/Myb domain
PfamPF002492.9E-1180124IPR001005SANT/Myb domain
CDDcd001672.17E-882125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVSMNPNPAP GFFFFDSMEN PINSSILPAG VRSLPPSYSS VAAATAAADT ASTSANNNTF  60
SFSEDQSKKI RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH  120
AQKYFLKVQK SGTSEHVPPP RPKRKAAHPY PQKAPKTAVP VVHQVTEVFP SPSASMENGY  180
VYQQPDSSSV LATPMSAGGA LSSWKYYPLP QASLSQVTPD ETANVGTTTA SSSNDSTAKI  240
WRGDQTKAAR VMPDFAQVYS FIGSVFDPNA SGHVEKLKQM DPLNLETVML LMRNLSFNLT  300
SPEFEDHRKV LASHDPATER ASGYGNIRSD KTTGSAIPAV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036392
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037014.11e-145PREDICTED: protein REVEILLE 5 isoform X1
SwissprotQ8H0W31e-102RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A061DUW21e-143A0A061DUW2_THECC; Homeodomain-like superfamily protein
STRINGLus100363920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.29e-86MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]