PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10036399

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WRKY

Protein Properties

Length: 246aa MW: 26897.3 Da PI: 10.7636

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10036399	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.5	1.8e-30	166	224	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ C+++k+ver+++dp ++++tY+ eHnh+ Lus10036399 166 SDVWAWRKYGQKPIKGSPYPRGYYRCSTSkACMARKQVERNRSDPGMFIVTYTAEHNHP 224 79**********************99889*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-30	155	226	IPR003657	WRKY domain
PROSITE profile	PS50811	34.521	160	226	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-26	163	226	IPR003657	WRKY domain
SMART	SM00774	1.1E-35	165	225	IPR003657	WRKY domain
Pfam	PF03106	2.1E-25	167	224	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MADDWDLLAV VRGCTATSTS HSSTTTAAAS TCCNSQSTVT SSSSPTSSFR LDFGSQSFPS 60 PGLDQVSRFF RRDPIGDQLH ELYKPFFSRS NPPLPLPSQN ASTLVSTISP PSPFAVDRAP 120 ITPPPLFRNQ QLLKRPLPSP SAASRSKRRK NQVKKVCQVP AEALSSDVWA WRKYGQKPIK 180 GSPYPRGYYR CSTSKACMAR KQVERNRSDP GMFIVTYTAE HNHPAPTHRN SLAATSRPKG 240 SHHPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-23	150	227	2	80	Disease resistance protein RRS1
5w3x_D	4e-23	150	227	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10036399

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002511920.1	2e-72	WRKY transcription factor 22
Swissprot	O04609	3e-65	WRK22_ARATH; WRKY transcription factor 22
TrEMBL	B9RDY1	4e-71	B9RDY1_RICCO; WRKY transcription factor, putative
STRING	Lus10036399	1e-179	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4205	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	2e-53	WRKY family protein

Link Out ? help Back to Top
Phytozome	Lus10036399

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Kloth KJ, et al. AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J. Exp. Bot., 2016. 67(11): p. 3383-96 [PMID:27107291] Camborde L, et al. Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nat Protoc, 2017. 12(9): p. 1933-1950 [PMID:28837131] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]