PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036401
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 216aa    MW: 23714.6 Da    PI: 9.5294
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036401genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.21.4e-32129187159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  Lus10036401 129 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCSVKKQVQRLSKDTSIVVTTYEGIHNHP 187
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-33115187IPR003657WRKY domain
SuperFamilySSF1182901.31E-28121188IPR003657WRKY domain
PROSITE profilePS5081129.023124189IPR003657WRKY domain
SMARTSM007741.7E-37129188IPR003657WRKY domain
PfamPF031067.4E-26130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEPPPPSTGG QPPPLAHNNQ NPPPDPMLFE SNPLLQIPFS SASSSLMQQP LPEIDWVSLL  60
SGGGQLMQMG NSGVINGGGY NNNEGNNNYS TSDHNNKDKK KAGGGGDHRR KAAARPRFAF  120
QTRSEDDILD DGYRWRKYGQ KAVKNSAYPR SYYRCTHHTC SVKKQVQRLS KDTSIVVTTY  180
EGIHNHPCEK LMETLTPLLK QMQFLTAAAA AASRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25119186774Probable WRKY transcription factor 4
2lex_A2e-25119186774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00317DAPTransfer from AT2G46130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036401
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341120.11e-76PREDICTED: probable WRKY transcription factor 24
TrEMBLA0A2I4GBD02e-72A0A2I4GBD0_JUGRE; probable WRKY transcription factor 24
STRINGLus100364011e-162(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.14e-52WRKY DNA-binding protein 56