PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10036455

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

CAMTA

Protein Properties

Length: 964aa MW: 107723 Da PI: 7.2308

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10036455	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	141.7	2.1e-44	62	165	3	105
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e k+rwl+++ei+aiL n + +++ ++ + pksg+++L++rk++r+frkDGy wkkk+dgktv+E+he+LKvg+ e +++yYah+e+n+tf rrcy Lus10036455 62 EEaKSRWLRPNEIHAILCNPKYFTVFVKPVNLPKSGTIVLFDRKMLRNFRKDGYRWKKKRDGKTVKEAHEHLKVGTEERIHVYYAHGEDNQTFVRRCY 159 4559******************************************************************************************** PP CG-1 100 wlLeee 105 wlL++ Lus10036455 160 WLLDKY 165 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	61.962	57	186	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.5E-61	60	234	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.2E-38	63	165	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.24E-7	418	476	IPR014756	Immunoglobulin E-set
Pfam	PF12796	1.1E-6	576	656	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.43E-13	577	686	No hit	No description
SuperFamily	SSF48403	1.26E-15	578	688	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	8.7E-16	590	689	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.202	594	686	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	6.4E-5	627	656	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.74	627	659	IPR002110	Ankyrin repeat
SMART	SM00248	1300	666	697	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.19E-8	739	840	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.595	774	800	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	50	789	811	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.614	790	819	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.044	812	834	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.066	813	837	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.6E-4	814	833	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	894	916	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.766	896	924	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
MALATIWAGS LRLLLLMLLL LRDDELPELP LPPATPLALP AIYHHLKSSV VYCDLDAGKV 60 LEEAKSRWLR PNEIHAILCN PKYFTVFVKP VNLPKSGTIV LFDRKMLRNF RKDGYRWKKK 120 RDGKTVKEAH EHLKVGTEER IHVYYAHGED NQTFVRRCYW LLDKYVSLTL QSPSVTPLNS 180 NSSSVSNPST PWLSAEQFDS GDGHAYSIAE KDLTDPGSLT VNHHQLRIHD INTLEWDDLV 240 SSDPNNLITF GDNSSYLNKQ NQVALNGAAS YHNASLPASN ISEGNSPINQ AIGPYVNSGT 300 TFYSAPAGTY SQISNLQLNS NTQSIHYQTM GLDSSLDNLI TDGLQSEESS TKWNNDAMAT 360 SKASVEDHLF EPSISPGDGS SASPAIGPGQ YSVEGYSFVI TDVSHAWAFS SETTKSLHLA 420 NSTLLCVCGD DCISTEVVQS GVYRCYLPPH SPGLVNLCLS LDGCKPLSQI VSFEYRESAH 480 NGDDVVSKDE SSTWERFHLQ TRLAYLLLST SKTLNLLRSK VSPSNLKEAD KFAIRTTNIT 540 RSWSYLFALI DENRISLTQA KEDVYEITLK SILQEWLLER VVEGCSKSSE YDAEGQGVIH 600 LCARLGYTWA IYLYSWSGLS LDFRDKHGWT ALHWAAYYGR EKMVAGLLSA GTKPNLVTDP 660 TAENPGGLTP ADVATQTGHE GLAAYLSEKA LVSHFNDMSI AGNVCGALQP TEPIIGAENL 720 SEEELYLKDT LAAYRTAADA ASRIQEAFRE RSMKLQAKVV ESSNPEAEAR SIVAAMKIQH 780 AFRNYESKKK MAAVAQIQHR FRTWKMRREF LTLRRHAIKI QAAFRGLRVR KHYSKILWSV 840 GVVEKAVLRW RLKRKGLRGL KVNDAIQVDE QQQTSDTEEE EGFFKASRKQ AEERVERAVV 900 TVQAMFRSKK AQVEYQRMKS AYNQASVCVQ TLNHDNDFAN LHSLLFLLGV WLDNSINRPT 960 FVR*

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

MALATIWAGS LRLLLLMLLL LRDDELPELP LPPATPLALP AIYHHLKSSV VYCDLDAGKV  60
LEEAKSRWLR PNEIHAILCN PKYFTVFVKP VNLPKSGTIV LFDRKMLRNF RKDGYRWKKK  120
RDGKTVKEAH EHLKVGTEER IHVYYAHGED NQTFVRRCYW LLDKYVSLTL QSPSVTPLNS  180
NSSSVSNPST PWLSAEQFDS GDGHAYSIAE KDLTDPGSLT VNHHQLRIHD INTLEWDDLV  240
SSDPNNLITF GDNSSYLNKQ NQVALNGAAS YHNASLPASN ISEGNSPINQ AIGPYVNSGT  300
TFYSAPAGTY SQISNLQLNS NTQSIHYQTM GLDSSLDNLI TDGLQSEESS TKWNNDAMAT  360
SKASVEDHLF EPSISPGDGS SASPAIGPGQ YSVEGYSFVI TDVSHAWAFS SETTKSLHLA  420
NSTLLCVCGD DCISTEVVQS GVYRCYLPPH SPGLVNLCLS LDGCKPLSQI VSFEYRESAH  480
NGDDVVSKDE SSTWERFHLQ TRLAYLLLST SKTLNLLRSK VSPSNLKEAD KFAIRTTNIT  540
RSWSYLFALI DENRISLTQA KEDVYEITLK SILQEWLLER VVEGCSKSSE YDAEGQGVIH  600
LCARLGYTWA IYLYSWSGLS LDFRDKHGWT ALHWAAYYGR EKMVAGLLSA GTKPNLVTDP  660
TAENPGGLTP ADVATQTGHE GLAAYLSEKA LVSHFNDMSI AGNVCGALQP TEPIIGAENL  720
SEEELYLKDT LAAYRTAADA ASRIQEAFRE RSMKLQAKVV ESSNPEAEAR SIVAAMKIQH  780
AFRNYESKKK MAAVAQIQHR FRTWKMRREF LTLRRHAIKI QAAFRGLRVR KHYSKILWSV  840
GVVEKAVLRW RLKRKGLRGL KVNDAIQVDE QQQTSDTEEE EGFFKASRKQ AEERVERAVV  900
TVQAMFRSKK AQVEYQRMKS AYNQASVCVQ TLNHDNDFAN LHSLLFLLGV WLDNSINRPT  960
FVR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10036455

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009959.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_011009967.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	B9HWX4	0.0	B9HWX4_POPTR; Uncharacterized protein
STRING	Lus10036455	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Lus10036455

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]