PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036457
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 250aa    MW: 27546.3 Da    PI: 7.9376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036457genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS77.52.3e-24732211146
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlt 97 
                  lve Ll+ A+ v+++   +a+al+    +l+sp+g+p+qR ++ f++AL++r+a+++ +  ++++ +  +++       +  l  +e +P++++++l+
  Lus10036457  73 LVEYLLSSADRVANNRCDEASALIDLCDHLSSPAGNPVQRTVHSFARALRERVAGETGSDQSTCTNNLFDDDVLRLPSPSILLfVHERFPYFRMQQLA 170
                  5789***************************************************55555555555555544433333333333689*********** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTg 146
                  + q + e+++ ++r+H iD++i+ Gl+W  ++qaL +++   +   l++T+
  Lus10036457 171 TVQPMAESAAAARRIHCIDLNIKSGLHWTGFMQALETQAdnYKLDLLKVTA 221
                  ************************************998545566999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.80847249IPR005202Transcription factor GRAS
PfamPF035148.0E-2273221IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MINFLSSARG KSRQAPPLSI METINLAATK IPQCPNNSAH ANSAQVSIPS LLNVPFDRSI  60
SGVSFHDQKN VELVEYLLSS ADRVANNRCD EASALIDLCD HLSSPAGNPV QRTVHSFARA  120
LRERVAGETG SDQSTCTNNL FDDDVLRLPS PSILLFVHER FPYFRMQQLA TVQPMAESAA  180
AARRIHCIDL NIKSGLHWTG FMQALETQAD NYKLDLLKVT APVWVPSSRR SHRGVVDQFR  240
PVKESQLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036457
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100364570.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-11RGA-like 2