PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036460
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 233aa    MW: 26023.9 Da    PI: 8.0882
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036460genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS92.85.4e-29702272149
         GRAS   2 velLlecAeavss...gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPil 91 
                  ve L++ Ae v +   +d+++a +lL+    l+s++gdp+qR++ yf +AL++r+ +s ++     +p+  s+ n     ++  l  l+  +e  P+ 
  Lus10036460  70 VEYLMAPAEKVGNnrtHDHQEAIHLLNLCDCLSSKTGDPIQRIVYYFSQALRKRVDHSDPTRNCNNRPEMVSDPNaekalTTVPLRLLQSVQEKIPFR 167
                  66788888888662336778888888888889***********************9955544433333333333322344555555567799****** PP

         GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgs 149
                   + ++   q +le v +++r+H+iD++i  GlQW a++qaLasR e+ p   l+iT+vg 
  Lus10036460 168 AVVQMSGIQILLENVGSSKRIHVIDLQIRTGLQWTAMMQALASRWESRPieLLKITAVGT 227
                  *********************************************8887779******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.92343232IPR005202Transcription factor GRAS
PfamPF035141.9E-2670227IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAAVDRVRPE EFQLTQELST PEILRIAARR IMSISSSSNS IDLSSLMNNP FDLSSPSGLS  60
YQDAIRVELV EYLMAPAEKV GNNRTHDHQE AIHLLNLCDC LSSKTGDPIQ RIVYYFSQAL  120
RKRVDHSDPT RNCNNRPEMV SDPNAEKALT TVPLRLLQSV QEKIPFRAVV QMSGIQILLE  180
NVGSSKRIHV IDLQIRTGLQ WTAMMQALAS RWESRPIELL KITAVGTGTL KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-1510222533147GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488851.12e-53DELLA protein RGL1-like
TrEMBLA0A067G8R72e-52A0A067G8R7_CITSI; Uncharacterized protein (Fragment)
STRINGLus100364601e-171(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-15RGA-like 2