PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10036556

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ERF

Protein Properties

Length: 130aa MW: 13923.5 Da PI: 11.1125

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10036556	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.9	7.9e-21	21	71	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+ge Lus10036556 21 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 71 689****.7*****43...36************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.0E-36	21	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-29	21	79	IPR001471	AP2/ERF domain
CDD	cd00018	6.45E-30	21	80	No hit	No description
Pfam	PF00847	7.7E-16	21	71	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.534	21	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.6E-8	22	33	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-21	22	79	IPR016177	DNA-binding domain
PRINTS	PR00367	8.6E-8	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MAGNIPVHAQ ISTTTAVKPR RFVGVRQRPS GRWVAEIKDS SQRVRLWLGT YDTPEEAARA 60 YDEAARALRG ENARTNFASS SDSKTATTNG SSPSAASSLA SPTPKPFSSL QAELSKNMQK 120 IMARNNGKD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-15	21	77	14	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10036556

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613536.1	2e-46	PREDICTED: ethylene-responsive transcription factor ESR1-like
TrEMBL	A0A2R6QS84	2e-44	A0A2R6QS84_ACTCH; Ethylene-responsive transcription factor RAP2-11 like
TrEMBL	A0A4D9AK56	1e-44	A0A4D9AK56_SALSN; EREBP-like factor
STRING	Lus10036556	1e-89	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8324	31	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19790.1	4e-18	related to AP2 11

Link Out ? help Back to Top
Phytozome	Lus10036556