PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036623
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 515aa    MW: 57293.7 Da    PI: 6.3856
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036623genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS405.64.7e-1241445131373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ecA++++++++   ++l+ + +  +  +g+p+qRl ay++e+L ar ++s+s++y++l+++e +   s++ l+++++++e++P+lkf++++a
  Lus10036623 144 LKQLLIECAKVIAENNMGYFENLVDKARGEVWITGEPIQRLGAYLVEGLVARKQSSGSNIYRTLNCREPE---SKDLLSYMQILYEICPYLKFGYMAA 238
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  ++er+HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p ++  +   l ++g+rLa ++e++++++ef+ l      d++ ++L
  Lus10036623 239 NGAIAEACRNAERIHIIDFQIGQGTQWMTLLQALAARPGGAPHVRITGIDDPLNKyaRGGGLDAVGKRLAALCEKFNITVEFQGL-PVFAPDVTRDML 335
                  ***************************************************999989999************************6.777899****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v++gEala+nl lqlh+++desv+++++rd +L+++ksl+Pkv ++veqe+++n++sFl+rf+e+leyy a+f+s++++l+r+ +eri +E+++l+r
  Lus10036623 336 DVRQGEALAINLPLQLHHTPDESVDVNNPRDGLLRMIKSLNPKVTTLVEQESNTNTTSFLTRFVETLEYYLAIFESIDVTLARDRKERIGLEQHCLAR 433
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  + vnvvaceg+er+erhe ++k ++r+++aGFk++pls+++++ +k+ll+ ++ + y++ e++g+++lgWk+r+L+s+SaW
  Lus10036623 434 DMVNVVACEGRERVERHEMFGKGKSRFTMAGFKQYPLSSYVNSVIKSLLKCYS-EHYTLMEKDGAMLLGWKERNLISASAW 513
                  *************************************************9998.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.731118495IPR005202Transcription factor GRAS
PfamPF035141.6E-121144513IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MDTQQLFGFS TVTHSGMSYS SPYPTVSSLP DRRLLGSLKF EIGNSPTSSF STQLDNETVS  60
SVSDSHEQPS STSDSHGESG RPNEQGKESS SRAWGQDEGR DSRPRAATLM SHPRQVEADA  120
PVEKRHKVMA EESSSLQSSQ PGNLKQLLIE CAKVIAENNM GYFENLVDKA RGEVWITGEP  180
IQRLGAYLVE GLVARKQSSG SNIYRTLNCR EPESKDLLSY MQILYEICPY LKFGYMAANG  240
AIAEACRNAE RIHIIDFQIG QGTQWMTLLQ ALAARPGGAP HVRITGIDDP LNKYARGGGL  300
DAVGKRLAAL CEKFNITVEF QGLPVFAPDV TRDMLDVRQG EALAINLPLQ LHHTPDESVD  360
VNNPRDGLLR MIKSLNPKVT TLVEQESNTN TTSFLTRFVE TLEYYLAIFE SIDVTLARDR  420
KERIGLEQHC LARDMVNVVA CEGRERVERH EMFGKGKSRF TMAGFKQYPL SSYVNSVIKS  480
LLKCYSEHYT LMEKDGAMLL GWKERNLISA SAWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5515051325378Protein SCARECROW
5b3h_A1e-5515051324377Protein SCARECROW
5b3h_D1e-5515051324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036623
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8308810.0EU830881.1 Linum usitatissimum clone LU0018C09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021651082.10.0scarecrow-like protein 21 isoform X1
RefseqXP_021651083.10.0scarecrow-like protein 21 isoform X2
RefseqXP_021651084.10.0scarecrow-like protein 21 isoform X3
RefseqXP_021651085.10.0scarecrow-like protein 21 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2P5CK430.0A0A2P5CK43_PARAD; GRAS transcription factor
STRINGLus100366230.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-170GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]