PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036624
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 214aa    MW: 24560.5 Da    PI: 9.7295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036624genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.6e-29140198159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDg++WrKYG+K+vk++++pr+YY+C s gC+vkk+ver++ed ++v++tYeg Hnh+
  Lus10036624 140 MDDGFKWRKYGKKSVKNTPYPRNYYKCPSVGCNVKKRVERDREDSSFVITTYEGVHNHH 198
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-31127199IPR003657WRKY domain
SuperFamilySSF1182901.7E-26132199IPR003657WRKY domain
PROSITE profilePS5081129.195135200IPR003657WRKY domain
SMARTSM007748.3E-32140199IPR003657WRKY domain
PfamPF031066.8E-23141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MNLIRAPPPP PPPPCQNPNN SNPFRQFADP LDFQFSDFLL PPDPLFNHDH DSRHEEIDNI  60
FASTGKYNNS YSFPQSNITA TSPLQVGSDG SCNSSSWTMI GRNDVKGSGR MRKVEEQKQR  120
KGEVVNRRVA FRTKSEVDVM DDGFKWRKYG KKSVKNTPYP RNYYKCPSVG CNVKKRVERD  180
REDSSFVITT YEGVHNHHRH QISPFKVQME LLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-25130197774Probable WRKY transcription factor 4
2lex_A6e-25130197774Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036624
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100366241e-159(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-38WRKY DNA-binding protein 50