PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036674
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34878.6 Da    PI: 4.4367
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036674genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1887140356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++++q++ Le+ Fe ++++  e++++LAk l L+ rqV +WFqNrRa++k
  Lus10036674  87 KKRRLSADQVKFLEKSFEVENKLEPERKTQLAKDLCLQPRQVAIWFQNRRARWK 140
                  56689************************************************9 PP
2HD-ZIP_I/II128.52.8e-4186177192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrls++qvk+LE+sFe e+kLeperK++la++L lqprqva+WFqnrRAR+ktkqlE+dy++L ++yd+lk++ + L ke+++L++e++
  Lus10036674  86 EKKRRLSADQVKFLEKSFEVENKLEPERKTQLAKDLCLQPRQVAIWFQNRRARWKTKQLEQDYQTLESSYDTLKADCDCLVKENDQLKAEIN 177
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1976144IPR009057Homeodomain-like
PROSITE profilePS5007117.13582142IPR001356Homeobox domain
SMARTSM003894.4E-1685146IPR001356Homeobox domain
CDDcd000861.17E-1587143No hitNo description
PfamPF000467.9E-1687140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.9E-1989149IPR009057Homeodomain-like
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PfamPF021836.1E-15142184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAADGNVPGD CITNFALLNQ TPTFSGVSKP PLGPFFLTRS SSPSFFGRRS IFRFEDADNQ  60
VRSFQLNENG DDDDKYDDLD YFRQPEKKRR LSADQVKFLE KSFEVENKLE PERKTQLAKD  120
LCLQPRQVAI WFQNRRARWK TKQLEQDYQT LESSYDTLKA DCDCLVKEND QLKAEINLLT  180
DKLQMKKEHI DTECEKVMII CEEPLQKPCA GAAIDSGSEG ITSGVVSCKQ QDDMSSARSD  240
VFDSDSPRGV HSSLLDESDH SQDKEDNLSK SLLPESYLFP KLEDDDYSDP SANFENHSFW  300
SSWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036674
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8305572e-99EU830557.1 Linum usitatissimum clone LU0025E09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021679221.11e-106homeobox-leucine zipper protein HAT5-like
SwissprotQ022831e-43HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA9PHH01e-102A9PHH0_POPTR; HD-ZIP family protein
STRINGLus100366740.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-46homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]