PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036749
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 458aa    MW: 50951.3 Da    PI: 7.9576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036749genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.3e-52141411128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk+++++ekewyfF++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++
  Lus10036749  14 MLPGFRFHPTDEELVGFYLKRKIHQRPLSI-ELIKQLDIYKFDPWDLPKMATTGEKEWYFFCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGN 110
                  579***************************.89***************9888999***************************************9566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + +glkk+Lvfykgra kg ktdW+mhe+rl
  Lus10036749 111 KCIGLKKSLVFYKGRAAKGFKTDWMMHEFRL 141
                  67***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-599180IPR003441NAC domain
PROSITE profilePS5100557.06414180IPR003441NAC domain
PfamPF023653.4E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MVEVVDKMEQ QEVMLPGFRF HPTDEELVGF YLKRKIHQRP LSIELIKQLD IYKFDPWDLP  60
KMATTGEKEW YFFCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGN KCIGLKKSLV  120
FYKGRAAKGF KTDWMMHEFR LPSLSDHQHP PAPAAAPSKR FLDKTIPAND AWAICRIFKK  180
TNSTAQRTLS QSWVSPMVQE VVHPTTFTSE GDDHFNMNNS SIMIPPTPPI HNFNYSNNNH  240
ITIDHHQTHN PYSSPSYSYN QYTNNLLLSP TMDHFGSLKP IINNTTNIPL APKPSYLHLQ  300
NYYPSFSTMG DHHHHEASAK STLELSSMLL NMASSPSILL GDFKQQGGGG GGGDHESVSS  360
VDQFSSGSQQ SNGNGGGGGL ISPLMDLVEH KKEPTMMMKG SSFANIDAIP FNCLGDGGGG  420
GAWKQNLLLW DNYANSSSPC PSSDQVPSTF STTKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-531618719171NO APICAL MERISTEM PROTEIN
1ut4_B1e-531618719171NO APICAL MERISTEM PROTEIN
1ut7_A1e-531618719171NO APICAL MERISTEM PROTEIN
1ut7_B1e-531618719171NO APICAL MERISTEM PROTEIN
3swm_A2e-531618722174NAC domain-containing protein 19
3swm_B2e-531618722174NAC domain-containing protein 19
3swm_C2e-531618722174NAC domain-containing protein 19
3swm_D2e-531618722174NAC domain-containing protein 19
3swp_A2e-531618722174NAC domain-containing protein 19
3swp_B2e-531618722174NAC domain-containing protein 19
3swp_C2e-531618722174NAC domain-containing protein 19
3swp_D2e-531618722174NAC domain-containing protein 19
4dul_A1e-531618719171NAC domain-containing protein 19
4dul_B1e-531618719171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036749
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362098.11e-134putative NAC domain-containing protein 94
TrEMBLB9S8V81e-129B9S8V8_RICCO; NAC domain-containing protein, putative
STRINGLus100367490.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein