PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10036753

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ZF-HD

Protein Properties

Length: 219aa MW: 23414.3 Da PI: 8.8643

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10036753	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.6	5.3e-32	73	130	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 + YkeClkNhAa++Gg a+DGCgEf ps++++ ++++lkCaACgCHRnFHRre+++ Lus10036753 73 VCSYKECLKNHAATMGGLALDGCGEFFPSPNSSpLDPTSLKCAACGCHRNFHRREPSS 130 579************************999999******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.3E-26	75	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.5E-29	76	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.03	76	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-20	76	132	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDLTPAAPPT STTSPLPISS SINPLISKSP NSPSGTDNNP NLLPTHLHKS LSLSNGVRRR 60 LHHHPQEPPT MVVCSYKECL KNHAATMGGL ALDGCGEFFP SPNSSPLDPT SLKCAACGCH 120 RNFHRREPSS SAVVHHHYHP LPAIQWTNHN NNSSSPSTSP SPSSPAASPT PHHSIYPPPP 180 PSSAPHMLLE HAPPLKQNDP PPPAAAVPQR RRSWRAEF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10036753

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612133.1	2e-42	zinc-finger homeodomain protein 11-like
TrEMBL	A0A2C9VUZ0	4e-41	A0A2C9VUZ0_MANES; Uncharacterized protein
STRING	Lus10036753	1e-152	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1979	31	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	5e-30	homeobox protein 30

Link Out ? help Back to Top
Phytozome	Lus10036753