PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036793
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 487aa    MW: 52609.1 Da    PI: 4.5171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036793genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-1977126255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++ GVr+++ +grWvAeI+d      ++ r++lg+++taeeAaka+++a+  l+g
  Lus10036793  77 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAAKAYDEAACLLRG 126
                  789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.39E-3076133No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2677133IPR001471AP2/ERF domain
PfamPF008478.6E-1477126IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1877134IPR016177DNA-binding domain
PROSITE profilePS5103219.30977134IPR001471AP2/ERF domain
SMARTSM003804.9E-3477141IPR001471AP2/ERF domain
PRINTSPR003673.0E-77889IPR001471AP2/ERF domain
PRINTSPR003673.0E-7100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKQEVINDLE TVDHHQYSTS PTMGTKRKAN NNDDDHHHQE PSPTTNGDDN NGNNMMSWDQ  60
MMEEAAALGG ARRARKRFVG VRQRPSGRWV AEIKDTIQKI RVWLGTYDTA EEAAKAYDEA  120
ACLLRGANTR TNFWPCSSPD SKPVLPPKIT NLLLLRLKAR NKDLATAEEG GGGCFNPGLS  180
SEIDLSSGSY SPEHDQDHEM DGVFHSMGGG GGGEDQYRKN DAVAENSIKT VCNSMGNAAV  240
VGNSIQTVVN TYGKGDKISD QMMYSVPNSI NCSDLSSYGG ENNLGNLMID FHQFDGPNSS  300
TGDGTVSTGG SQPYSAFDIA QEMMEPLTKQ FSLDDDHHNE DGRANEALIN QSDRSNTREN  360
GEDDDDQASA LSEISKRLNY ERNFSASLYA YNGVTECLTR TAIERHRAAG RSISDEGSED  420
VKKGDFTISD KHFGNGDGGA QPGTTKSGSG TVSSGSSSTS SSLNTEEDVE LSLWSSLDLP  480
SLCFSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036793
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100367930.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11