PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036811
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family YABBY
Protein Properties Length: 169aa    MW: 18760.5 Da    PI: 9.5519
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036811genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY63.77.2e-201663249
        YABBY  2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvn 49
                 d+   s+++Cyv+CnfCnt+lav +P++ l+ +vtv+CGhC++l  ++
  Lus10036811 16 DLIPPSDHLCYVRCNFCNTVLAVGIPYKRLLDTVTVKCGHCSNLSFLS 63
                 67789**************************************86554 PP
2YABBY90.93.4e-2887141109163
        YABBY 109 vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                  +p++p v++PPek+ r Psaynrf++eeiqrik++nP+i hreafsaaaknWa +
  Lus10036811  87 SPKAPFVVKPPEKKHRLPSAYNRFMREEIQRIKSANPEIPHREAFSAAAKNWARY 141
                  689999***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-192073IPR006780YABBY protein
SuperFamilySSF470951.83E-885139IPR009071High mobility group box domain
PfamPF046901.4E-2689141IPR006780YABBY protein
Gene3DG3DSA:1.10.30.104.3E-595140IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MNMNQQQQQE EKVTMDLIPP SDHLCYVRCN FCNTVLAVGI PYKRLLDTVT VKCGHCSNLS  60
FLSTRPPLQG QCLNDHQYPH LSLQPLSPKA PFVVKPPEKK HRLPSAYNRF MREEIQRIKS  120
ANPEIPHREA FSAAAKNWAR YIPTSAGAAG SSVSGSNTNS GLHFAGMR*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036811
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067816.14e-85protein CRABS CLAW isoform X4
SwissprotQ76EJ04e-61YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLB9REB67e-83B9REB6_RICCO; Protein CRABS CLAW, putative
STRINGLus100368111e-124(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.17e-60YABBY family protein