PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036890
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 152aa    MW: 16592.8 Da    PI: 10.4222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036890genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-0587109123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp C+k+F++   L  H r+H
  Lus10036890  87 HECPFCNKVFKSGQALGGHKRSH 109
                  79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.9E-684110No hitNo description
Gene3DG3DSA:3.30.160.604.8E-484109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.5E-1286109IPR007087Zinc finger, C2H2
PROSITE profilePS501579.72387109IPR007087Zinc finger, C2H2
SMARTSM003550.007587109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSCLMRKEAK DDSFIGGQQQ RRIIQEHQKK KARDVTYESG ENSFEAEPTT IPSKKKMVVK  60
SWNNNGRKNP PPAAKGNAAL SKKAKTHECP FCNKVFKSGQ ALGGHKRSHF VRASDHDGNA  120
TLVIKSSAAG MIDLNLPAPE EQGNANGFVT W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021299623.11e-24uncharacterized protein LOC110428201
TrEMBLA0A061E9Y63e-23A0A061E9Y6_THECC; C2H2-like zinc finger protein, putative
STRINGLus100368901e-110(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-19C2H2-like zinc finger protein