PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036959
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 182aa    MW: 20631.3 Da    PI: 8.4492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036959genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.41.6e-2471492128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                  ++G+rF+P+d+el+  yL + + + +       + ++ i e+d+y+  ePw+ + k + +e+e+yfF+kr+kk+++gkr +r+  + +Wk++ ++  v
  Lus10036959   7 AVGYRFKPSDQELILTYLYPLAIRATvnpnhpPPPFDGIIECDLYSPdEPWKRHFKDEVNESELYFFTKRKKKNEKGKRVERSFGNCVWKSQKEEPIV 104
                  78****************9988777755565534446899*****9769***9866667889*****************************9998888 PP

          NAM  93 lsk..kgelvglkktLvfy.......kgrapkgektdWvmheyrl 128
                  +s+  +++++g  +++ +        + +++++e  +Wvmheyrl
  Lus10036959 105 YSTdgESTTIGFDRSFSYKvinhgggSSSSSSSEAGEWVMHEYRL 149
                  888766777*********988877655677777899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-264172IPR003441NAC domain
PROSITE profilePS5100527.7176172IPR003441NAC domain
PfamPF023657.9E-178149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKIKNLAVGY RFKPSDQELI LTYLYPLAIR ATVNPNHPPP PFDGIIECDL YSPDEPWKRH  60
FKDEVNESEL YFFTKRKKKN EKGKRVERSF GNCVWKSQKE EPIVYSTDGE STTIGFDRSF  120
SYKVINHGGG SSSSSSSEAG EWVMHEYRLG RVLADRCGGG IEDYVICCVR KKEGSKKSSS  180
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-15517716170NO APICAL MERISTEM PROTEIN
1ut4_B2e-15517716170NO APICAL MERISTEM PROTEIN
1ut7_A2e-15517716170NO APICAL MERISTEM PROTEIN
1ut7_B2e-15517716170NO APICAL MERISTEM PROTEIN
3swm_A2e-15517719173NAC domain-containing protein 19
3swm_B2e-15517719173NAC domain-containing protein 19
3swm_C2e-15517719173NAC domain-containing protein 19
3swm_D2e-15517719173NAC domain-containing protein 19
3swp_A2e-15517719173NAC domain-containing protein 19
3swp_B2e-15517719173NAC domain-containing protein 19
3swp_C2e-15517719173NAC domain-containing protein 19
3swp_D2e-15517719173NAC domain-containing protein 19
4dul_A2e-15517716170NAC domain-containing protein 19
4dul_B2e-15517716170NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100369591e-132(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-12NAC domain containing protein 47