PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037137
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 485aa    MW: 52480 Da    PI: 4.3923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037137genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-1976125255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++ GVr+++ +grWvAeI+d      ++ r++lg+++taeeAaka+++a+  l+g
  Lus10037137  76 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAAKAYDEAACLLRG 125
                  789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.36E-3075132No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2676132IPR001471AP2/ERF domain
PfamPF008478.5E-1476125IPR001471AP2/ERF domain
SMARTSM003806.0E-3476139IPR001471AP2/ERF domain
PROSITE profilePS5103219.30976133IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1876133IPR016177DNA-binding domain
PRINTSPR003672.9E-77788IPR001471AP2/ERF domain
PRINTSPR003672.9E-799115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MKQEVINDLK TIDHHQDSTS PTMGTKRKAN NNDDDDQQDH SPTTNGGDDN NNSMMSWDQM  60
MEEAAALGGA RRARKRFVGV RQRPSGRWVA EIKDTIQKIR VWLGTYDTAE EAAKAYDEAA  120
CLLRGANTRT NFWPCSSPDA KPVLPPKITN LLLLRLKARN KDLATSGEES GGGGCLNRGP  180
SSEIDLSSGS YSPEHDQDHE MDGAFHCMGG GEDQYGNNNA VVENSIQTVA NCIRNAVVVG  240
NSIHSVVNNY KLGDQEGDKM ISMVANSLNC NGLTSYDGEN NLGNLMIDFH QFDGPDSSTG  300
DGTVSTGGSQ PYSAFDIAQE MMEPLTKQFA LDSDHHNEDG SEKEALINQS DRSNTHENGE  360
DDEDQASSLS EISKRLNYER NFSASLYAYN GVTECLTRTA IERHRAVGRS ISDEGSEDVK  420
KGDFNISDKS FSNGDGGIET GTMKSGSGTV SSGSSTTSSS LNTEEDVELS LWSSLDLPSL  480
CFSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037137
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100371370.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11