PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037218
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 288aa    MW: 33171.9 Da    PI: 4.7086
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037218genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-1866122157
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  r+k++++t++q++ Le+ F++++++  e++ +LA+++gL+ rqV +WFqNrRa+ k+
  Lus10037218  66 RCKKRRLTASQVQFLERSFKNENKLEPERKIQLANEIGLQPRQVAIWFQNRRARFKN 122
                  678889************************************************995 PP
2HD-ZIP_I/II124.83.9e-4068159293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrl++ qv++LE+sF++e+kLeperK +la+e+glqprqva+WFqnrRAR+k+kqlEkd+++Lk+ +d+lk++ ++L +e+e+Lr+++++
  Lus10037218  68 KKRRLTASQVQFLERSFKNENKLEPERKIQLANEIGLQPRQVAIWFQNRRARFKNKQLEKDFDSLKSDFDRLKSDYSSLLHEKESLRNQVNS 159
                  9***************************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1957125IPR009057Homeodomain-like
PROSITE profilePS5007117.62163123IPR001356Homeobox domain
SMARTSM003892.2E-1766127IPR001356Homeobox domain
PfamPF000469.7E-1666121IPR001356Homeobox domain
CDDcd000861.72E-1668124No hitNo description
Gene3DG3DSA:1.10.10.602.2E-1970130IPR009057Homeodomain-like
PRINTSPR000312.9E-594103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000312.9E-5103119IPR000047Helix-turn-helix motif
PfamPF021832.2E-16123164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASETLSGGS GGFDHLPYWI PSISTSLYGA AARQMVEYEN DGTFFNPMVK EELCCDEDFE  60
NSSSPRCKKR RLTASQVQFL ERSFKNENKL EPERKIQLAN EIGLQPRQVA IWFQNRRARF  120
KNKQLEKDFD SLKSDFDRLK SDYSSLLHEK ESLRNQVNSL KEKLTAREIK ARETTPFRVP  180
AAIVPPMAKS DLVDSDSPHS VLIEPSSQSH YVFEENQSDY FSQDEADDHQ NSLIMMNNNR  240
FMMAAAESIS FDRFSSNEHD NNNNNLLPEF PVEEDQPYLV LDLMNWM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037218
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021662774.16e-70homeobox-leucine zipper protein HAT5-like
TrEMBLB9S2C72e-68B9S2C7_RICCO; Homeobox protein, putative
STRINGLus100372180.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-40homeobox 1