PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037678
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 590aa    MW: 64827.9 Da    PI: 5.204
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037678genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.2e-07472520348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W   E  +lvd+v ++G g W+ I r        Rt  ++k++w+++l
      Lus10037678 472 AWALSEVIKLVDGVSMYGAGKWSEIKRLSFassPFRTSVDLKDKWRNLL 520
                      68888999*******************9999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.56465524IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-11467526IPR009057Homeodomain-like
SuperFamilySSF466897.02E-14467529IPR009057Homeodomain-like
SMARTSM007172.6E-6469522IPR001005SANT/Myb domain
CDDcd116605.92E-17471521No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
METEVGVEGN GEGKLLEESE VEKLCSSLAS SPHHIADPIV YKLVRVEGDG RFVPATDDEV  60
MEVADLFLDD NIDTGFLDIE QTLGCASGDG MHQLHSTGGL LQAENQDFHP DEIIVQPQET  120
ISEFAQSICE SFISGCESAR DFPDPLGFSE DVPLTPVVDP SMPDFSKVKG EICLDDLSIK  180
ELQETFRATF GRETSVKDKQ WLKRRIAMGL TNSCDISASS FTIRDNKLVG NGVSSDNMVA  240
VISSGQLPEA NSCNERQLPS IQSSEQKNEQ VVSDERLREG GMCEDHKDVD DHTEERAAKR  300
VRKPTKRYIE ELSETESKEA IGRLMDVDPN SGPGQPSPNC HMRLERNVSL GGRTLIIRLD  360
SLGGYEVQIP CASRVRRSRP RKDFMSLLKF NSIDVTTTVV EKAFAAHIAR PHDENMNIVT  420
KSQSIPERPQ SLLVDVTGKE EPINEDSSGD SDGNIATVPT PKGGFRRKHH RAWALSEVIK  480
LVDGVSMYGA GKWSEIKRLS FASSPFRTSV DLKDKWRNLL KASFAQAPPD KGISMRKNAA  540
ASPIPETILS RVRKLAEKQS LVRPGGSNKV AGNSPHCKDN VPKKQSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375381RRSRPRK
2375382RRSRPRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068895.10.0uncharacterized protein LOC105631404 isoform X3
TrEMBLA0A067KX710.0A0A067KX71_JATCU; Uncharacterized protein
STRINGLus100376780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-110TRF-like 6