PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10037752

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 262aa MW: 29146.9 Da PI: 4.3686

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10037752	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	24.5	3.1e-08	113	169	4	60
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 Ll+ A+ v++g + +a +lL l++++++p++R+++yf +AL+a++a+++ ++ Lus10037752 113 YLLSSANNVAKGRFDQALSLLGLCDGLSTSQANPVERVVHYFSQALRAKIAEETGTV 169 6999***********************************************955544 PP
2	GRAS	34.3	3.3e-11	202	260	242	299
GRAS 242 veqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 + ea++ ns+ F++rf+e l +y alfd l++ + +++er++vE +l++ i+n+v Lus10037752 202 AKVEASRvNSPCFAARFVEMLFHYGALFDGLDTCTGDNEQERTVVESTYLSKLIMNAVV 260 55677777************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.1E-5	113	169	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-8	202	260	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGYHLHHDDR FFLDSDMHTF DHVEVDDDDQ WSLQHGRSQE LDGNTDDDDD EDSDQWPVLD 60 VSSTVNPHLE TEESSTLSIE DVIRHAGMRM IHMSSNNHGL SDRDVRNVAL TGYLLSSANN 120 VAKGRFDQAL SLLGLCDGLS TSQANPVERV VHYFSQALRA KIAEETGTVQ NLIISGDYKI 180 FRPDDTSVHS SQISQHIAAT QAKVEASRVN SPCFAARFVE MLFHYGALFD GLDTCTGDNE 240 QERTVVESTY LSKLIMNAVV E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10037752

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10037752	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	9e-07	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10037752