PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037755
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 174aa    MW: 19942.3 Da    PI: 8.8567
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037755genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS110.62.2e-342152228374
         GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                  +k+v+sl P v+vv+e ea+hns++F +rf+eal + +a fd++++ +  +   e+r+ vE+++l+++i+n+v +e ++r+ r  + + Wr+ + ++ 
  Lus10037755   2 MKFVRSLHPWVMVVIETEANHNSPDFGQRFVEALFTSVARFDCVAECIEDDCtaEARTAVEEVYLNERIRNMVVAERDDRVIRDVRIAVWRKYFARCR 99 
                  689*****************************************9998766577******************************************** PP

         GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                  + +++ls+ a + akl++++ +      v  ++++sl+lgWkd pLv+vSaW+
  Lus10037755 100 MLEIQLSKLALNHAKLVVSRLPcAASCLVRvDNRKSLLLGWKDTPLVFVSAWK 152
                  **********************7666666646678999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.751130IPR005202Transcription factor GRAS
PfamPF035147.3E-322152IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MMKFVRSLHP WVMVVIETEA NHNSPDFGQR FVEALFTSVA RFDCVAECIE DDCTAEARTA  60
VEEVYLNERI RNMVVAERDD RVIRDVRIAV WRKYFARCRM LEIQLSKLAL NHAKLVVSRL  120
PCAASCLVRV DNRKSLLLGW KDTPLVFVSA WKFVGRNRKP RIVVDDTTSS LIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037755
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017977950.16e-42PREDICTED: DELLA protein RGL1
STRINGLus100377551e-123(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.16e-13RGA-like protein 3