PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038020
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 474aa    MW: 51190.2 Da    PI: 8.6036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038020genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.6e-14301346555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h++ E++RR++iN++++ L++l+P+a      K++Ka+ L  A+eY+k Lq
  Lus10038020 301 HSQSEKKRRAKINKKLSMLQDLIPNA-----NKVDKASLLDDAIEYLKTLQ 346
                  999**********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.33E-15292350No hitNo description
Gene3DG3DSA:4.10.280.108.7E-17293356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.012296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-18299374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-14302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAEHPTPSAP WFSPFSDKPY PPSPMVHDDD GGVAALVLES GQLLARRPRS GLRPLSSARL  60
SCPSRLDKLD SQCDEDEPRA AEEQHAWIDS HLVPEYKDTA DLALNNDIIP KVPDNHQVQH  120
RPNQNPITEC NLGWGPIGRM QQPDHNEPRL HNFAHILRPS RLLRPDGRQS TNSCSTSSTN  180
GPNSSARLDR GMQRQSSASG KTPPVESTLV ESGSRSVKAL GNQLGLLATG GATEEAGSLG  240
DDGTKFVANI AARDKNPERG NTSVCSLAAS NNIERLKGRD HYANSNGEQG RKRKRRSAEI  300
HSQSEKKRRA KINKKLSMLQ DLIPNANKVD KASLLDDAIE YLKTLQLQLQ MMAMGRGLMM  360
HPMMLPGMQA PQMAPPPSMG MGMGMNMPMG LGCIPNPFST SPVLGLPGQM LPVPMPQLQP  420
FGHLPVPTGG SSSNLSIPMP GVDLLGSAPM MGPIHAVQNI NPEFMNIDHK KAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290295RKRKRR
2293308KRRSAEIHSQSEKKRR
3305310KKRRAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100380200.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.11e-16bHLH family protein