PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038062
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 279aa    MW: 31373.6 Da    PI: 5.618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038062genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-162875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++v ++G g W++ ar  g++Rt+k+c++rw +yl
      Lus10038062 28 KGPWTAEEDSILANYVSLHGEGYWNAAARSSGLKRTGKSCRLRWMNYL 75
                     79********************************************97 PP
2Myb_DNA-binding44.63.4e-1481124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++ +++++ ++G++ W++Ia+ ++ gRt++++k++w++
      Lus10038062  81 RGNITLQEQLVILQLHSRWGNR-WSKIAEQLP-GRTDNEIKNYWRT 124
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5132375IPR017930Myb domain
SuperFamilySSF466892.75E-2926122IPR009057Homeodomain-like
SMARTSM007177.3E-122777IPR001005SANT/Myb domain
PfamPF002492.3E-142875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-202982IPR009057Homeodomain-like
CDDcd001673.58E-93075No hitNo description
PROSITE profilePS5129422.06876130IPR017930Myb domain
SMARTSM007172.2E-1280128IPR001005SANT/Myb domain
PfamPF002497.7E-1381124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2183128IPR009057Homeodomain-like
CDDcd001673.05E-985124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDGSLENIHF MMSYDWNHSD EGRSTVKKGP WTAEEDSILA NYVSLHGEGY WNAAARSSGL  60
KRTGKSCRLR WMNYLRPNVR RGNITLQEQL VILQLHSRWG NRWSKIAEQL PGRTDNEIKN  120
YWRTRVQKLA KQLNCEVSSE QFRDAMHYDW IPRLIERIQS STTPKLPHIH QPTSSPSLYS  180
RDTNFNNSVG SASTDNSNID VVDRDNVANM SSSLEWQATS SNGASSDSFD SMTGLDFGTS  240
NYGCGGGCSN AVAVEEQSPP WEMLDDSIWL ALENDGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2328122497MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-232812258151MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-232812258151MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-232812227120MYB TRANSFORMING PROTEIN
1mse_C2e-2328122497C-Myb DNA-Binding Domain
1msf_C2e-2328122497C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038062
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348686.37e-81transcription factor MYB108-like
SwissprotQ10MB43e-73MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2K3LUS61e-80A0A2K3LUS6_TRIPR; MYB-related protein P-like
STRINGLus100380620.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.19e-73myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]