PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038082
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 226aa    MW: 24442.8 Da    PI: 5.5409
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038082genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-183584255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Lus10038082 35 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALYCLRG 84
                 8*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-313598IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-203593IPR016177DNA-binding domain
PfamPF008472.0E-113584IPR001471AP2/ERF domain
PROSITE profilePS5103221.7993592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-283593IPR001471AP2/ERF domain
CDDcd000181.94E-283594No hitNo description
PRINTSPR003675.5E-93647IPR001471AP2/ERF domain
PRINTSPR003675.5E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAADQNQQSR TYGSSSSNIT GIMEQEQQGQ EQAVKYKGVR KRKWGKWVSE IRLPNSRERI  60
WLGSYDSPEK AARAFDAALY CLRGPGARFN FPDNPPDIVI DGALLTPQDI QLVATRYANQ  120
INTTHSAPHH VPTEDGQQQQ QDQTLLFSAR DGNDKGNCSN TTSTTDEDIP VGPAVITTTT  180
TTTTAAIHET PIDWSFLGML DSQSHHHPPQ TPGEVSAAAA AAAAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1535921472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019312.18e-50PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ9C5914e-46ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA9PLA32e-47A9PLA3_POPTR; RAP2-like protein
TrEMBLT1QCN53e-47T1QCN5_CARPA; Ethylene-responsive transcription factor 2
STRINGLus100380821e-168(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-46ERF family protein