PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038150
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 132aa    MW: 14291 Da    PI: 8.4592
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038150genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.4e-1789118433
         GATA   4 CgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                  C+t +Tp+WRrgp g+ktLCnaCGl y k 
  Lus10038150  89 CNTFDTPMWRRGPLGPKTLCNACGLEYHKD 118
                  **************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.1E-780130IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-1188119No hitNo description
CDDcd002027.79E-1089117No hitNo description
PROSITE profilePS5011410.75289113IPR000679Zinc finger, GATA-type
PfamPF003201.2E-1489119IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-1389120IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MQGGETDLRI GSSSGIVNEQ YGYGTPTFGM VNKDPNNNNY NYNYNNPSGV GVPTSAALAP  60
PLAALAPTDQ ATFVNDLMIP RNLKRRLFCN TFDTPMWRRG PLGPKTLCNA CGLEYHKDEN  120
KNKAMQASTS N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100381501e-93(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.11e-13GATA transcription factor 29